David Umulis: search on Z-Library

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1

Mathematical model studies of the comprehensive generation of major and minor phyllotactic patterns in plants with a predominant focus on orixate phyllotaxis

Yonekura, Takaaki, Iwamoto, Akitoshi, Fujita, Hironori, Sugiyama, Munetaka, Umulis, David

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.33 MB

english, 2019

2

A lumped parameter model of endoplasm flow in Physarum polycephalum explains migration and polarization-induced asymmetry during the onset of locomotion

Oettmeier, Christina, Döbereiner, Hans-Günther, Umulis, David

Journal:

Year:

2019

Language:

english

File:

PDF, 5.38 MB

english, 2019

3

A physiologically based model for ethanol and acetaldehyde metabolism in human beings

David M. Umulis, Nihat M. Gürmen, Prashant Singh, H. Scott Fogler

Journal:

Year:

2005

Language:

english

File:

PDF, 361 KB

english, 2005

4

Acceleration of PDE-Based Biological Simulation Through the Development of Neural Network Metamodels

Burzawa, Lukasz, Li, Linlin, Wang, Xu, Buganza-Tepole, Adrian, Umulis, David M.

Journal:

Current Pathobiology Reports

Year:

2020

File:

PDF, 2.95 MB

2020

5

Evaluation of BMP-mediated patterning in a 3D mathematical model of the zebrafish blastula embryo

Li, Linlin, Wang, Xu, Mullins, Mary C., Umulis, David M.

Journal:

Journal of Mathematical Biology

Year:

2019

File:

PDF, 1.72 MB

2019

6

Organism-Scale Modeling of Early Drosophila Patterning via Bone Morphogenetic Proteins

David M. Umulis, Osamu Shimmi, Michael B. O'Connor, Hans G. Othmer

Journal:

Developmental Cell

Year:

2010

Language:

english

File:

PDF, 2.18 MB

english, 2010

7

[IEEE 2019 IEEE Frontiers in Education Conference (FIE) - Covington, KY, USA (2019.10.16-2019.10.19)] 2019 IEEE Frontiers in Education Conference (FIE) - An Investigation of Undergraduatesâ Computational Thinking in a Sophomore-Level Biomedical Engineering Course

Shoaib, Huma, Cardella, Monica, Madamanchi, Aasakiran, Umulis, David

Year:

2019

File:

PDF, 93 KB

2019

8

A mechanistic integrative computational model of macrophage polarization: Implications in human pathophysiology

Zhao, Chen, Mirando, Adam C., Sové, Richard J., Medeiros, Thalyta X., Annex, Brian H., Popel, Aleksander S., Umulis, David

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.94 MB

english, 2019

9

Proteolytic Restriction of Chordin Range Underlies BMP Gradient Formation

Tuazon, Francesca B., Wang, Xu, Andrade, Jonathan Lee, Umulis, David, Mullins, Mary C.

Journal:

Year:

2020

File:

PDF, 5.85 MB

2020

10

Regulation of BMP activity and range in Drosophila wing development

Laurel A Raftery, David M Umulis

Journal:

Current Opinion in Cell Biology

Year:

2012

Language:

english

File:

PDF, 903 KB

english, 2012

11

Facilitated Transport of a Dpp/Scw Heterodimer by Sog/Tsg Leads to Robust Patterning of the Drosophila Blastoderm Embryo

Osamu Shimmi, David Umulis, Hans Othmer, Michael B. O’Connor

Journal:

Year:

2005

Language:

english

File:

PDF, 661 KB

english, 2005

12

[IEEE 2018 IEEE Frontiers in Education Conference (FIE) - San Jose, CA, USA (2018.10.3-2018.10.6)] 2018 IEEE Frontiers in Education Conference (FIE) - Factors Mediating Learning and Application of Computational Modeling by Life Scientists

Madamanchi, Aasakiran, Cardella, Monica E., Glazier, James A., Umulis, David M.

Year:

2018

Language:

english

File:

PDF, 97 KB

english, 2018

13

[IEEE 2019 IEEE Frontiers in Education Conference (FIE) - Covington, KY, USA (2019.10.16-2019.10.19)] 2019 IEEE Frontiers in Education Conference (FIE) - Computation, Gender, and Engineering Identity Among Biomedical Engineering Undergraduates

Shoaib, Huma, Cardella, Monica E., Madamanchi, Aasakiran, Umulis, David

Year:

2019

File:

PDF, 3.00 MB

2019

14

Template-based mapping of dynamic motifs in tissue morphogenesis

Stern, Tomer, Shvartsman, Stanislav Y., Wieschaus, Eric F., Umulis, David

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 2.46 MB

2020

15

Formation and interpretation of the BMP morphogen gradient in the Drosophila embryo

Carolyn Peluso, David Umulis, Young-Jun Kim, Michael O'Connor, Mihaela Serpe

Journal:

Developmental Biology

Year:

2011

Language:

english

File:

PDF, 56 KB

english, 2011

16

[IEEE 2012 5th International Conference on Biomedical Engineering and Informatics (BMEI) - Chongqing, China (2012.10.16-2012.10.18)] 2012 5th International Conference on BioMedical Engineering and Informatics - Scale invariance of morphogen-mediated patterning by flux optimization

Umulis, David M., Othmer, Hans G.

Year:

2012

Language:

english

File:

PDF, 750 KB

english, 2012

17

Scale invariance of BMP signaling gradients in zebrafish

Huang, Yan, Umulis, David M

Journal:

Scientific Reports

Year:

2019

File:

PDF, 1.43 MB

2019

18

Modular analysis of the control of flagellar Ca2+-spike trains produced by CatSper and CaV channels in sea urchin sperm

Priego-Espinosa, Daniel A., Darszon, Alberto, Guerrero, AdÃ¡n, GonzÃ¡lez-Cota, Ana Laura, Nishigaki, Takuya, MartÃnez-Mekler, Gustavo, Carneiro, Jorge, Umulis, David

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 6.88 MB

2020

19

Mitofusin 2 regulates neutrophil adhesive migration and the actin cytoskeleton

Zhou, Wenqing, Hsu, Alan Y., Wang, Yueyang, Syahirah, Ramizah, Wang, Tianqi, Jeffries, Jacob, Wang, Xu, Mohammad, Haroon, Seleem, Mohamed N., Umulis, David, Deng, Qing

Journal:

Journal of Cell Science

Year:

2020

File:

PDF, 4.52 MB

2020

20

Systems biology of spatial organization: Autoregulation and competition in BMP-mediated patterning

Michael Pargett, Robin E. Harris, Hilary L. Ashe, David M. Umulis

Journal:

Developmental Biology

Year:

2010

Language:

english

File:

PDF, 125 KB

english, 2010

21

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression

Verd, Berta, Crombach, Anton, Jaeger, Johannes, Umulis, David

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.02 MB

english, 2017

22

Brat Promotes Stem Cell Differentiation via Control of a Bistable Switch that Restricts BMP Signaling

Robin E. Harris, Michael Pargett, Catherine Sutcliffe, David Umulis, Hilary L. Ashe

Journal:

Developmental Cell

Year:

2011

Language:

english

File:

PDF, 1.98 MB

english, 2011

23

An Integrative multi-lineage model of variation in leukopoiesis and acute myelogenous leukemia

Sarker, Joyatee M., Pearce, Serena M., Nelson, Robert P., Kinzer-Ursem, Tamara L., Umulis, David M., Rundell, Ann E.

Journal:

BMC Systems Biology

Year:

2017

Language:

english

File:

PDF, 3.28 MB

english, 2017

24

The BMP-Binding Protein Crossveinless 2 Is a Short-Range, Concentration-Dependent, Biphasic Modulator of BMP Signaling in Drosophila

Mihaela Serpe, David Umulis, Amy Ralston, Jun Chen, David J. Olson, Andrei Avanesov, Hans Othmer, Michael B. O'Connor, Seth S. Blair

Journal:

Developmental Cell

Year:

2008

Language:

english

File:

PDF, 2.60 MB

english, 2008

25

Emergent mechanics of actomyosin drive punctuated contractions and shape network morphology in the cell cortex

Miller, Callie J., Harris, Demetrius, Weaver, Robert, Ermentrout, G. Bard, Davidson, Lance A., Umulis, David

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 11.53 MB

english, 2018

26

An automated workflow for quantifying RNA transcripts in individual cells in large data-sets

Pharris, Matthew C., Wu, Tzu-Ching, Chen, Xinping, Wang, Xu, Umulis, David M., Weake, Vikki M., Kinzer-Ursem, Tamara L.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

27

Label-Free Bond-Selective Imaging by Listening to Vibrationally Excited Molecules

Wang, Han-Wei, Chai, Ning, Wang, Pu, Hu, Song, Dou, Wei, Umulis, David, Wang, Lihong V., Sturek, Michael, Lucht, Robert, Cheng, Ji-Xin

Journal:

Physical Review Letters

Year:

2011

Language:

english

File:

PDF, 1.57 MB

english, 2011

28

[IEEE 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - San Antonio, TX, USA (2011.12.4-2011.12.6)] 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Steady state probability approximation applied to stochastic model of biological network

Karim, Md. Shahriar, Umulis, David M., Buzzard, Gregery T.

Year:

2011

Language:

english

File:

PDF, 237 KB

english, 2011

29

LobeFinder: a convex hull-based method for quantitative boundary analyses of lobed plant cells

Wu, Tzu-Ching, Belteton, Samuel, Pack, Jessica, Szymanski, Daniel B., Umulis, David

Journal:

PLANT PHYSIOLOGY

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

30

Fluorescent imaging of protein myristoylation during cellular differentiation and development

Witten, Andrew J., Ejendal, Karin F. K., Gengelbach, Lindsey M., Traore, Meghan A., Wang, Xu, Umulis, David M., Calve, Sarah, Kinzer-Ursem, Tamara L.

Journal:

The Journal of Lipid Research

Year:

2017

Language:

english

File:

PDF, 587 KB

english, 2017

31

Facilitated Transport of a Dpp/Scw Heterodimer by Sog/Tsg Leads to Robust Patterning of the Drosophila Blastoderm Embryo

Osamu Shimmi, David Umulis, Hans Othmer, Michael B. O’Connor

Journal:

Year:

2005

Language:

english

File:

PDF, 31 KB

english, 2005

32

Publisher’s Note: Label-Free Bond-Selective Imaging by Listening to Vibrationally Excited Molecules [Phys. Rev. Lett. 106 , 238106 (2011)]

Wang, Han-Wei, Chai, Ning, Wang, Pu, Hu, Song, Dou, Wei, Umulis, David, Wang, Lihong V., Sturek, Michael, Lucht, Robert, Cheng, Ji-Xin

Journal:

Physical Review Letters

Year:

2011

File:

PDF, 22 KB

2011

33

Model-Based Analysis for Qualitative Data: An Application in Drosophila Germline Stem Cell Regulation

Pargett, Michael, Rundell, Ann E., Buzzard, Gregery T., Umulis, David M., Saucerman, Jeffrey J.

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 5.32 MB

english, 2014

34

Label-Free Imaging of Lipid-Droplet Intracellular Motion in Early Drosophila Embryos Using Femtosecond-Stimulated Raman Loss Microscopy

Dou, Wei, Zhang, Delong, Jung, Yookyung, Cheng, Ji-Xin, Umulis, David M.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

35

[Current Topics in Developmental Biology] Multiscale Modeling of Developmental Systems Volume 81 || Robustness of Embryonic Spatial Patterning in Drosophila melanogaster

Year:

2008

Language:

english

File:

PDF, 1.46 MB

english, 2008

36

[IEEE 2019 12th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI) - Suzhou, China (2019.10.19-2019.10.21)] 2019 12th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI) - Ground Truth Annotator and 3D Dataset Generator for Validation of Nuclei Segmentation Programs

Wu, Tzu-Ching, Wang, Xu, Umulis, David M.

Year:

2019

File:

PDF, 1.52 MB

2019

37

Shaping BMP Morphogen Gradients through Enzyme-Substrate Interactions

Carolyn E. Peluso, David Umulis, Young-Jun Kim, Michael B. O'Connor, Mihaela Serpe

Journal:

Developmental Cell

Year:

2011

Language:

english

File:

PDF, 1.42 MB

english, 2011

38

Quantitative model analysis with diverse biological data: Applications in developmental pattern formation

Pargett, Michael, Umulis, David M.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.98 MB

english, 2013

39

The Role of Mathematical Models in Understanding Pattern Formation in Developmental Biology

Umulis, David M., Othmer, Hans G.

Journal:

Bulletin of Mathematical Biology

Year:

2015

Language:

english

File:

PDF, 3.13 MB

english, 2015

40

BMP signaling in wing development: A critical perspective on quantitative image analysis

Alexander Brooks, Wei Dou, Xiaoying Yang, Tara Brosnan, Michael Pargett, Laurel A. Raftery, David M. Umulis

Journal:

Year:

2012

Language:

english

File:

PDF, 1.99 MB

english, 2012

41

[IEEE 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP) - Cambridge (2018.3.21-2018.3.23)] 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP) - Leveraging Compute Clusters for Large-Scale Parametric Screens of Reaction-Diffusion Systems

Karim, Md Shahriar, Othmer, Hans G., Umulis, David M.

Year:

2018

Language:

english

File:

PDF, 251 KB

english, 2018

42

The importance of geometry in mathematical models of developing systems

Umulis, David M, Othmer, Hans G

Journal:

Current Opinion in Genetics & Development

Year:

2012

Language:

english

File:

PDF, 980 KB

english, 2012

43

Capabilities and Limitations of Tissue Size Control through Passive Mechanical Forces

Kursawe, Jochen, Brodskiy, Pavel A., Zartman, Jeremiah J., Baker, Ruth E., Fletcher, Alexander G., Umulis, David

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 7.19 MB

english, 2015

44

Effects of Carbon Nanotube-Tethered Nanosphere Density on Amperometric Biosensing: Simulation and Experiment

Claussen, Jonathan C., Hengenius, James B., Wickner, Monique M., Fisher, Timothy S., Umulis, David M., Porterfield, D. Marshall

Journal:

The Journal of Physical Chemistry C

Year:

2011

Language:

english

File:

PDF, 4.96 MB

english, 2011

45

Efficient calculation of steady state probability distribution for stochastic biochemical reaction network

Shahriar Karim, Gregery T Buzzard, David M Umulis

Journal:

Year:

2012

Language:

english

File:

PDF, 608 KB

english, 2012

46

[IEEE 2016 9th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI) - Datong, China (2016.10.15-2016.10.17)] 2016 9th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI) - A point matching algorithm for point set registration

Yan Huang,, Umulis, David M.

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

47

Interplay Between the Persistent Random Walk and the Contact Inhibition of Locomotion Leads to Collective Cell Behaviors

Hassan, Abdel-Rahman, Biel, Thomas, Umulis, David M., Kim, Taeyoon

Journal:

Bulletin of Mathematical Biology

Year:

2019

Language:

english

File:

PDF, 2.36 MB

english, 2019

48

Neural control of body-plan axis in regenerating planaria

Pietak, Alexis, Bischof, Johanna, LaPalme, Joshua, Morokuma, Junji, Levin, Michael, Umulis, David

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 16.41 MB

english, 2019

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